omicsdata.npz package

Submodules

omicsdata.npz.archive module

class omicsdata.npz.archive.Archive(fn)

Bases: object

This is a derivative of the ‘resultserializer’ file format that’s compatible with the visualization tools provides by Pairtree. This class is used to compress numpy data into an npz file type

add(name, data)

Adds key, value pair to the archive

Parameters:

• name (str) – The key to store the data under in the archive

• data (object) – The data to store in the archive (np.ndarray, list, np.int32, etc.)

Return type:

None

get(name)

Gets the value associated with a particular key in the archive

Parameters:

name (str) – A key to extract from the archive

Returns:

the data associated with the name input

Return type:

object

get_mutrel(_)

This is an empty function for compatibility

has(name)

Checks if the archive has a particular key value

Parameters:

name (str) – The key to check for in the archive

Returns:

Returns True is the key exists in the archive, false otherwise

Return type:

bool

save()

Saves all of the elements in the ‘to_add’ dictionary without overwriting any existing information

Module contents